Package: CRABS 1.2.0.9001

Bjørn Tore Kopperud

CRABS: Congruent Rate Analyses in Birth-Death Scenarios

Features tools for exploring congruent phylogenetic birth-death models. It can construct the pulled speciation- and net-diversification rates from a reference model. Given alternative speciation- or extinction rates, it can construct new models that are congruent with the reference model. Functionality is included to sample new rate functions, and to visualize the distribution of one congruence class. See also Louca & Pennell (2020) <doi:10.1038/s41586-020-2176-1>.

Authors:Bjørn Tore Kopperud [aut, cre], Sebastian Höhna [aut], Andrew F. Magee [aut], Jérémy Andréoletti [aut]

CRABS_1.2.0.9001.tar.gz
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CRABS.pdf |CRABS.html
CRABS/json (API)
NEWS

# Install 'CRABS' in R:
install.packages('CRABS', repos = c('https://afmagee.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/afmagee/crabs/issues

Datasets:

On CRAN:

4.02 score 7 stars 5 scripts 215 downloads 14 exports 43 dependencies

Last updated 1 years agofrom:d1ccbd2fdb. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 18 2024
R-4.5-winOKOct 18 2024
R-4.5-linuxOKOct 18 2024
R-4.4-winOKOct 18 2024
R-4.4-macOKOct 18 2024
R-4.3-winOKOct 18 2024
R-4.3-macOKOct 18 2024

Exports:congruent.modelscrabs.loglikelihoodcreate.modelfull.plot.regularity.thresholdsjoint.congruent.modelsmodel2dfread.RevBayessample.basic.modelssample.basic.models.jointsample.congruence.classsample.congruence.class.posteriorsample.ratessummarize.posteriorsummarize.trends

Dependencies:apeclicolorspacecpp11deSolvedigestdplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatex2explatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepatchworkpillarpkgconfigpracmapurrrR6RColorBrewerRcpprlangscalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr