Package: CRABS 1.2.0.9001
CRABS: Congruent Rate Analyses in Birth-Death Scenarios
Features tools for exploring congruent phylogenetic birth-death models. It can construct the pulled speciation- and net-diversification rates from a reference model. Given alternative speciation- or extinction rates, it can construct new models that are congruent with the reference model. Functionality is included to sample new rate functions, and to visualize the distribution of one congruence class. See also Louca & Pennell (2020) <doi:10.1038/s41586-020-2176-1>.
Authors:
CRABS_1.2.0.9001.tar.gz
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CRABS.pdf |CRABS.html✨
CRABS/json (API)
NEWS
# Install 'CRABS' in R: |
install.packages('CRABS', repos = c('https://afmagee.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/afmagee/crabs/issues
- primates - Primates phylogenetic tree
- primates_ebd - RevBayes Primates birth-death model
- primates_ebd_log - Primates birth-death model
- primates_ebd_tess - TESS Primates birth-death model
- primates_ebd_treepar - TreePar Primates birth-death model
Last updated 1 years agofrom:d1ccbd2fdb. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 18 2024 |
R-4.5-win | OK | Oct 18 2024 |
R-4.5-linux | OK | Oct 18 2024 |
R-4.4-win | OK | Oct 18 2024 |
R-4.4-mac | OK | Oct 18 2024 |
R-4.3-win | OK | Oct 18 2024 |
R-4.3-mac | OK | Oct 18 2024 |
Exports:congruent.modelscrabs.loglikelihoodcreate.modelfull.plot.regularity.thresholdsjoint.congruent.modelsmodel2dfread.RevBayessample.basic.modelssample.basic.models.jointsample.congruence.classsample.congruence.class.posteriorsample.ratessummarize.posteriorsummarize.trends
Dependencies:apeclicolorspacecpp11deSolvedigestdplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatex2explatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepatchworkpillarpkgconfigpracmapurrrR6RColorBrewerRcpprlangscalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr